Curation
Add or subtract voxels, create new labels, and delete selected labels.
Tool / Try model
Interactive Tool and Model Demo
Explore the 3D curation workflow and try our model.
Block-wise annotation
Curate large 3D volumes in manageable spatial blocks.
One-click segmentation
Segment any cell you selected.
Human-in-the-loop fine-tuning
Use curated labels to update the model iteratively.
Quantitative measurement
Measure instance counts, volumes, morphology, and spatial statistics.
3D reconstruction
Inspect reconstructed cellular instances from label volumes.
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Example Gallery
Explore example 3D segmentations generated by FOCUS-3D. Select an example to inspect the original volume and instance segmentation.
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Try FOCUS-3D online
Try FOCUS-3D directly online with your own 3D image or TIFF volume. Upload your data to the Hugging Face Space, run the model, and view the resulting segmentation.
Bring your own 3D volume
The online demo lets you upload a 3D image or TIFF volume and explore the model's segmentation result in your browser.