Dataset portal

FOCUS-3D Dataset: gold-standard 3D microscopy annotated datasets

13dataset families

13annotated volumes

400,000+3D instances

Annotated nuclei datasets available for browsing and preview.

Drosophila embryonuclei

3D nuclear instance annotations from a Drosophila embryo microscopy volume.

Z slices30 slicesVoxel size1 × 1 × 1SourceHufnagel group

Drosophila embryowhole embryonuclei

3D nuclear instance annotations from a whole Drosophila embryo microscopy volume.

Z slices125 slicesVoxel size5 × 1 × 1SourceKeller lab

Zebrafish embryoeyenuclei

3D nuclear instance annotations from the zebrafish embryonic eye region.

Z slices84 slicesVoxel size5 × 1 × 1SourceFOCUS-3D collection

Zebrafish embryonuclei

3D nuclear instance annotations from a zebrafish embryo microscopy volume.

Z slices41 slicesVoxel size5 × 1 × 1SourceFOCUS-3D collection

Zebrafish embryowhole embryonuclei

3D nuclear instance annotations from a zebrafish whole embryo microscopy volume.

Z slices180 slicesVoxel size5.86 × 1 × 1SourceSchier lab

Zebrafish embryowhole embryonuclei

3D nuclear instance annotations from a zebrafish whole embryo microscopy volume.

Z slices253 slicesVoxel size8 × 1 × 1SourceKeller lab

Mouse embryonuclei

3D nuclear instance annotations from a mouse embryo microscopy volume.

Z slices70 slicesVoxel size5 × 1 × 1SourceKeller lab

Zebrafish embryonotochordnuclei

3D nuclear instance annotations from the zebrafish embryonic notochord.

Z slices101 slicesVoxel size5 × 1 × 1SourceFOCUS-3D collection