QQUIC Lab

Foundational Open-source Cellular Unified Segmentation

FOCUS-3D

A foundation model for robust and generalizable 3D cell segmentation.

Open GitHub
FOCUS-3D interface showing annotated 3D cellular segmentation

Gold-standard datasets

3D annotated microscopy datasets

Human iPSC previewHuman iPSC66 × 512 × 512 voxelsDrosophila embryo previewDrosophila embryo30 × 320 × 730 voxelsDrosophila embryo previewDrosophila embryo125 × 603 × 1272 voxelsZebrafish embryo previewZebrafish embryo84 × 2046 × 2046 voxelsZebrafish embryo previewZebrafish embryo41 × 2048 × 2048 voxelsZebrafish embryo previewZebrafish embryo41 × 2048 × 2048 voxelsZebrafish embryo previewZebrafish embryo180 × 1920 × 1920 voxelsZebrafish embryo previewZebrafish embryo253 × 1792 × 1818 voxelsZebrafish embryo previewZebrafish embryo41 × 2048 × 2048 voxelsZebrafish embryo previewZebrafish embryo40 × 2048 × 2048 voxelsMouse embryo previewMouse embryo70 × 1779 × 1349 voxelsZebrafish embryo previewZebrafish embryo101 × 2046 × 2046 voxelsZebrafish embryo previewZebrafish embryo24 × 2048 × 2048 voxelsC. elegans embryo previewC. elegans embryo35 × 512 × 708 voxelsHuman iPSC previewHuman iPSC66 × 512 × 512 voxelsDrosophila embryo previewDrosophila embryo30 × 320 × 730 voxelsDrosophila embryo previewDrosophila embryo125 × 603 × 1272 voxelsZebrafish embryo previewZebrafish embryo84 × 2046 × 2046 voxelsZebrafish embryo previewZebrafish embryo41 × 2048 × 2048 voxelsZebrafish embryo previewZebrafish embryo41 × 2048 × 2048 voxelsZebrafish embryo previewZebrafish embryo180 × 1920 × 1920 voxelsZebrafish embryo previewZebrafish embryo253 × 1792 × 1818 voxelsZebrafish embryo previewZebrafish embryo41 × 2048 × 2048 voxelsZebrafish embryo previewZebrafish embryo40 × 2048 × 2048 voxelsMouse embryo previewMouse embryo70 × 1779 × 1349 voxelsZebrafish embryo previewZebrafish embryo101 × 2046 × 2046 voxelsZebrafish embryo previewZebrafish embryo24 × 2048 × 2048 voxelsC. elegans embryo previewC. elegans embryo35 × 512 × 708 voxels
Browse datasets

Interactive tool

Interactive 3D segmentation and curation platform

Explore our model