Tool

FOCUS-3D Interactive Tool

A unified workflow for 3D instance curation, model-assisted segmentation, quantitative measurement, and human-in-the-loop model improvement.

3D segmentation previewVideo asset pending

Curation

Add or subtract voxels, create new labels, and delete selected labels.

ROI cleanup

Delete labels inside user-defined regions for fast local correction.

Block-wise annotation

Curate large 3D volumes in manageable spatial blocks.

One-click segmentation

Run pretrained FOCUS3D inference inside the annotation workflow.

Human-in-the-loop fine-tuning

Use newly curated labels to update the model iteratively.

Quantitative measurement

Measure instance counts, volumes, morphology, and spatial statistics.

3D reconstruction

Inspect reconstructed cellular instances from curated label volumes.

Dual-channel visualization

View raw signal, labels, and paired channels during correction.